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I am using sqlite database.

DATABASES = {
    'default': {
        'ENGINE': 'django.db.backends.sqlite3',
        'NAME': 'mydatabase.db',
    }
}

When makemigrations or migrate starts, the file mydatabase.db is created (its size is 0 bytes) in root of the project, but I get an error - django.db.utils.OperationalError: no such table: ...

try using the full path for the database